SPARTA
  • 1. Introduction
    • 1.1 What is SPARTA
    • 1.2 SPARTA features
    • General features
    • Models
    • Geometry
    • Gas-phase collisions and chemistry
    • Surface collisions and chemistry
    • Performance
    • Diagnostics
    • Output
    • Pre- and post-processing
    • 1.3 Grids and surfaces in SPARTA
    • 1.4 Open source distribution
    • 1.5 Acknowledgments and citations
  • 2. Getting Started
    • 2.1 What's in the SPARTA distribution
    • 2.2 Making SPARTA
    • 2.3 Making SPARTA with optional packages
    • 2.4 Building SPARTA as a library
      • Static library:
      • Shared library:
      • Additional requirement for using a shared library:
      • Calling the SPARTA library:
    • 2.5 Testing SPARTA
    • 2.6 Running SPARTA
    • 2.7 Command-line options
    • 2.8 SPARTA screen output
  • 3. Commands
    • 3.1 SPARTA input script
    • 3.2 Parsing rules
    • 3.3 Input script structure
    • 3.4 Commands listed by category
    • 3.5 Individual commands
    • Fix styles
    • Compute styles
    • Collide styles
    • Surface collide styles
    • Surface reaction styles
  • 4. Packages
    • FFT package
    • KOKKOS package
    • VTK package
  • 5. Accelerating SPARTA performance
    • 5.1 Measuring performance
    • 5.2 Packages with optimized styles
    • 5.3 KOKKOS package
  • 6. How-to discussions
    • 6.1 2d simulations
    • 6.2 Axisymmetric simulations
    • 6.3 Running multiple simulations from one input script
    • 6.4 Output from SPARTA (stats, dumps, computes, fixes, variables)
      • Global/per-particle/per-grid/per-surf/pre-tally data
      • Scalar/vector/array data
      • Statistical output
      • Dump file output
      • Fixes that write output files
      • Computes that process output quantities
      • Computes that generate values to output
      • Fixes that generate values to output
      • Variables that generate values to output
      • Summary table of output options and data flow between commands
    • 6.5 Visualizing SPARTA snapshots
    • 6.6 Library interface to SPARTA
    • 6.7 Coupling SPARTA to other codes
    • 6.8 Details of grid geometry in SPARTA
    • 6.9 Details of surfaces in SPARTA
    • 6.10 Restarting a simulation
    • 6.11 Using the ambipolar approximation
    • 6.12 Using multiple vibrational energy levels
    • 6.13 Surface elements: explicit, implicit, distributed
    • 6.14 Implicit surface ablation
    • 6.15 Transparent surface elements
    • 6.16 Visualizing SPARTA output with ParaView
    • 6.17 Custom per-particle, per-grid, per-surf attributes
    • 6.18 Variable timestep simulations
    • 6.19 Details of particles in SPARTA
  • 7. Example problems
  • 8. Performance & scalability
  • 9. Additional tools
    • dump2cfg tool
    • dump2xyz tool
    • grid_refine tool
    • implicit_grid tool
    • jagged tools
    • log2txt tool
    • logplot tool
    • paraview tools
    • stl2surf tool
    • surf_create tool
    • surf_transform tool
  • 10. Modifying & extending SPARTA
    • 10.1 Compute styles
    • 10.2 Fix styles
    • 10.3 Region styles
    • 10.4 Collision styles
    • 10.5 Surface collision styles
    • 10.6 Chemistry styles
    • 10.7 Dump styles
    • 10.8 Input script commands
  • 11. Python interface to SPARTA
    • 11.1 Building SPARTA as a shared library
    • 11.2 Installing the Python wrapper into Python
    • 11.3 Extending Python with MPI to run in parallel
    • 11.4 Testing the Python-SPARTA interface
      • Test SPARTA and Python in serial:
      • Test SPARTA and Python in parallel:
      • Running Python scripts:
    • 11.5 Using SPARTA from Python
    • 11.6 Example Python scripts that use SPARTA
    • 11.7 Calling Python from SPARTA
  • 12. Errors
    • 12.1 Common problems
    • 12.2 Reporting bugs
    • 12.3 Error & warning messages
    • Errors:
    • Warnings:
  • 13. Future and history
    • 13.1 Coming attractions
    • 13.2 Past versions
  • adapt_grid command
  • balance_grid command
  • bound_modify command
  • boundary command
  • clear command
  • collide command
  • collide_modify command
  • compute command
  • compute boundary command
  • compute count command
  • compute count/kk command
  • compute distsurf/grid command
  • compute distsurf/grid/kk command
  • compute dt/grid command
  • compute dt/grid/kk command
  • compute eflux/grid command
  • compute eflux/grid/kk command
  • compute fft/grid command
  • compute fft/grid/kk command
  • compute gas/collision/grid command
  • compute gas/collision/tally command
  • compute gas/reaction/grid command
  • compute reaction/tally command
  • compute grid command
  • compute grid/kk command
  • compute isurf/grid command
  • compute isurf/grid/kk command
  • compute ke/particle command
  • compute ke/particle/kk command
  • compute lambda/grid command
  • compute lambda/grid/kk command
  • compute pflux/grid command
  • compute pflux/grid/kk command
  • compute property/grid command
  • compute property/grid/kk command
  • compute property/surf command
  • compute property/surf/kk command
  • compute react/boundary command
  • compute react/boundary/kk command
  • compute react/isurf/grid command
  • compute react/isurf/grid/kk command
  • compute react/surf command
  • compute react/surf/kk command
  • compute reduce command
  • compute reduce/kk command
  • compute sonine/grid command
  • compute sonine/grid/kk command
  • compute surf command
  • compute surf/kk command
  • compute surf/collision/tally command
  • compute surf/reaction/tally command
  • compute temp command
  • compute temp/kk command
  • compute thermal/grid command
  • compute thermal/grid/kk command
  • compute tvib/grid command
  • create_box command
  • create_grid command
  • create_isurf command
  • create_particles command
  • create_particles/kk command
  • custom command
  • dimension command
  • dump command
  • dump image command
  • dump image command
  • dump movie command
    • Rendering of particles
    • Rendering of grid cells
    • Rendering of surface elements
  • dump_modify command
  • dump particle/vtk command
  • dump grid/vtk command
  • dump surf/vtk command
  • echo command
  • fix command
  • fix ablate command
  • fix adapt command
  • fix adapt/kk command
  • fix ambipolar command
  • fix ambipolar command/kk
  • fix ave/grid command
  • fix ave/grid/kk command
  • fix ave/histo command
  • fix ave/histo/kk command
  • fix ave/histo/weight command
  • fix ave/histo/weight/kk command
  • fix ave/surf command
  • fix ave/time command
  • fix balance command
  • fix balance/kk command
  • fix controller command
  • fix custom command
  • fix dt/reset command
  • fix emit/face command
  • fix emit/face/kk command
  • fix emit/face/file command
  • fix emit/surf command
  • fix field/grid command
  • fix field/particle command
  • fix grid/check command
  • fix grid/check/kk command
  • fix halt command
  • fix move/surf command
  • fix move/surf/kk command
  • fix print command
  • fix surf/temp command
  • fix temp/global/rescale command
  • fix temp/global/rescale/kk command
  • fix temp/rescale command
  • fix temp/rescale/kk command
  • fix vibmode command
  • global command
  • group command
  • if command
  • include command
  • jump command
  • label command
  • log command
  • mixture command
  • move_surf command
  • next command
  • package command
  • partition command
  • print command
  • python command
  • quit command
  • react command
  • react_modify command
  • read_grid command
  • read_isurf command
  • read_particles command
  • read_restart command
  • read_surf command
  • region command
  • remove_surf command
  • reset_timestep command
  • restart command
  • run command
  • scale_particles command
  • seed command
  • shell command
  • species command
  • species_modify command
  • stats command
  • stats_modify command
  • stats_style command
  • suffix command
  • surf_collide command
  • surf_modify command
  • surf_react command
  • surf_react adsorb command
  • surf_react adsorb command
  • surf_react adsorb/kk command
  • timestep command
  • uncompute command
  • undump command
  • unfix command
  • units command
  • variable command
    • Math Operators
    • Math Functions
    • Special Functions
    • Particle Vectors
    • Grid Vectors
    • Compute References
    • Fix References
    • Custom Attribute References
    • Surface Collision and Surface Reaction Model References
    • Variable References
  • write_grid command
  • write_isurf command
  • write_restart command
  • write_surf command
SPARTA
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