6Jul20 version files changed by 20Nov20 version: BUILD_CMAKE.md cmake/CMakeLists.txt cmake/common/print/sparta_options.cmake cmake/common/process/sparta_build_options.cmake cmake/common/set/sparta_cmake_defaults.cmake cmake/common/set/sparta_options.cmake cmake/common/test/sparta_test_utils.cmake doc/Manual.html doc/Manual.txt doc/Section_errors.html doc/Section_errors.txt doc/Section_howto.html doc/Section_howto.txt doc/Section_start.html doc/Section_start.txt doc/adapt_grid.html doc/adapt_grid.txt doc/balance_grid.html doc/balance_grid.txt doc/collide.html doc/collide.txt doc/compute_property_grid.html doc/compute_property_grid.txt doc/create_grid.html doc/create_grid.txt doc/global.html doc/global.txt doc/read_grid.html doc/read_grid.txt doc/stats_style.html doc/stats_style.txt doc/write_grid.html doc/write_grid.txt examples/CMakeLists.txt examples/ablation/in.ablation.2d examples/ablation/in.ablation.3d examples/ablation/in.ablation.3d.reactions examples/ablation/log.24Aug20.mpi_1.ablation.2d examples/ablation/log.24Aug20.mpi_1.ablation.3d examples/ablation/log.24Aug20.mpi_4.ablation.2d examples/ablation/log.24Aug20.mpi_4.ablation.3d examples/ablation/log.ablation.2d.8Oct19.g++.1 examples/ablation/log.ablation.2d.8Oct19.g++.4 examples/ablation/log.ablation.3d.8Oct19.g++.1 examples/ablation/log.ablation.3d.8Oct19.g++.4 examples/ablation/log.ablation.3d.reactions.5Nov19.g++.1 examples/ablation/log.ablation.3d.reactions.5Nov19.g++.4 examples/adapt/in.adapt.rotate examples/adapt/in.adapt.slide examples/adapt/in.adapt.static examples/adapt/log.24Aug20.mpi_1.adapt.rotate examples/adapt/log.24Aug20.mpi_1.adapt.slide examples/adapt/log.24Aug20.mpi_1.adapt.static examples/adapt/log.24Aug20.mpi_4.adapt.rotate examples/adapt/log.24Aug20.mpi_4.adapt.slide examples/adapt/log.24Aug20.mpi_4.adapt.static examples/adapt/log.adapt.rotate.22Sep15.g++.1 examples/adapt/log.adapt.rotate.22Sep15.g++.4 examples/adapt/log.adapt.slide.22Sep15.g++.1 examples/adapt/log.adapt.slide.22Sep15.g++.4 examples/adapt/log.adapt.static.22Sep15.g++.1 examples/adapt/log.adapt.static.22Sep15.g++.4 examples/ambi/in.ambi examples/ambi/log.12May15.linux.mpi_1.ambi examples/ambi/log.24Aug20.mpi_1.ambi examples/ambi/log.24Aug20.mpi_4.ambi examples/ambi/log.ambi.12May15.g++.1 examples/ambi/log.ambi.12May15.g++.4 examples/axi/in.axi examples/axi/log.24Aug20.mpi_1.axi examples/axi/log.24Aug20.mpi_4.axi examples/axi/log.axi.16Dec14.g++.1 examples/axi/log.axi.16Dec14.g++.4 examples/chem/in.chem examples/chem/log.24Aug20.mpi_1.chem examples/chem/log.24Aug20.mpi_4.chem examples/chem/log.chem.16Dec14.g++.1 examples/chem/log.chem.16Dec14.g++.4 examples/circle/in.circle examples/circle/in.circle.distributed examples/circle/in.circle.transparent examples/circle/log.24Aug20.mpi_1.circle examples/circle/log.24Aug20.mpi_1.circle.distributed examples/circle/log.24Aug20.mpi_1.circle.transparent examples/circle/log.24Aug20.mpi_4.circle examples/circle/log.24Aug20.mpi_4.circle.distributed examples/circle/log.24Aug20.mpi_4.circle.transparent examples/circle/log.circle.16Dec14.g++.1 examples/circle/log.circle.16Dec14.g++.4 examples/circle/log.circle.distributed.12Feb19.g++.1 examples/circle/log.circle.distributed.12Feb19.g++.4 examples/circle/log.circle.transparent.6Nov19.g++.1 examples/circle/log.circle.transparent.6Nov19.g++.4 examples/collide/6SpeciesAir.species examples/collide/6SpeciesAirII.vss examples/collide/6SpeciesAirIII.vss examples/collide/in.collide examples/collide/in.collideInterspecies examples/collide/log.24Aug20.mpi_1.collide examples/collide/log.24Aug20.mpi_4.collide examples/collide/log.collide.16Dec14.g++.1 examples/collide/log.collide.16Dec14.g++.4 examples/collide/log.collideInterspecies.13Dec18.g++.1 examples/collide/log.collideInterspecies.13Dec18.g++.4 examples/emit/in.emit.face examples/emit/in.emit.face.region examples/emit/in.emit.surf.boundary examples/emit/in.emit.surf.flow examples/emit/in.emit.surf.flow.region examples/emit/in.emit.surf.normal examples/emit/in.emit.surf.normal.region examples/emit/log.24Aug20.mpi_1.emit.face examples/emit/log.24Aug20.mpi_1.emit.face.region examples/emit/log.24Aug20.mpi_1.emit.surf.boundary examples/emit/log.24Aug20.mpi_1.emit.surf.flow examples/emit/log.24Aug20.mpi_1.emit.surf.flow.region examples/emit/log.24Aug20.mpi_1.emit.surf.normal examples/emit/log.24Aug20.mpi_1.emit.surf.normal.region examples/emit/log.24Aug20.mpi_4.emit.face examples/emit/log.24Aug20.mpi_4.emit.face.region examples/emit/log.24Aug20.mpi_4.emit.surf.boundary examples/emit/log.24Aug20.mpi_4.emit.surf.flow examples/emit/log.24Aug20.mpi_4.emit.surf.flow.region examples/emit/log.24Aug20.mpi_4.emit.surf.normal examples/emit/log.24Aug20.mpi_4.emit.surf.normal.region examples/emit/log.emit.face.12May15.g++.1 examples/emit/log.emit.face.12May15.g++.4 examples/emit/log.emit.face.region.12May15.g++.1 examples/emit/log.emit.face.region.12May15.g++.4 examples/emit/log.emit.surf.boundary.13May15.g++.1 examples/emit/log.emit.surf.boundary.13May15.g++.4 examples/emit/log.emit.surf.flow.12May15.g++.1 examples/emit/log.emit.surf.flow.12May15.g++.4 examples/emit/log.emit.surf.flow.region.12May15.g++.1 examples/emit/log.emit.surf.flow.region.12May15.g++.4 examples/emit/log.emit.surf.normal.12May15.g++.1 examples/emit/log.emit.surf.normal.12May15.g++.4 examples/emit/log.emit.surf.normal.region.12May15.g++.1 examples/emit/log.emit.surf.normal.region.12May15.g++.4 examples/fft/in.fft.2d examples/fft/in.fft.3d examples/fft/log.fft.2d.4Apr17.g++.1 examples/fft/log.fft.2d.4Apr17.g++.4 examples/fft/log.fft.3d.4Apr17.g++.1 examples/fft/log.fft.3d.4Apr17.g++.4 examples/flowfile/in.flowfile examples/flowfile/log.24Aug20.mpi_1.flowfile examples/flowfile/log.24Aug20.mpi_4.flowfile examples/flowfile/log.flowfile.24Feb15.g++.1 examples/flowfile/log.flowfile.24Feb15.g++.4 examples/free/in.free examples/free/log.24Aug20.mpi_1.free examples/free/log.24Aug20.mpi_4.free examples/free/log.free.16Dec14.g++.1 examples/free/log.free.16Dec14.g++.4 examples/implicit/in.implicit.2d examples/implicit/in.implicit.2d.rectangle examples/implicit/in.implicit.3d.big examples/implicit/in.implicit.3d.small examples/implicit/log.implicit.2d.8Oct19.g++.1 examples/implicit/log.implicit.2d.8Oct19.g++.4 examples/implicit/log.implicit.2d.rectangle.8Oct19.g++.1 examples/implicit/log.implicit.2d.rectangle.8Oct19.g++.4 examples/implicit/log.implicit.3d.big.8Oct19.g++.1 examples/implicit/log.implicit.3d.big.8Oct19.g++.4 examples/implicit/log.implicit.3d.small.8Oct19.g++.1 examples/implicit/log.implicit.3d.small.8Oct19.g++.4 examples/jagged/in.jagged.2d examples/jagged/in.jagged.2d.distributed examples/jagged/in.jagged.3d examples/jagged/in.jagged.3d.distributed examples/jagged/log.24Aug20.mpi_1.jagged.2d examples/jagged/log.24Aug20.mpi_1.jagged.2d.distributed examples/jagged/log.24Aug20.mpi_4.jagged.2d examples/jagged/log.24Aug20.mpi_4.jagged.2d.distributed examples/jagged/log.jagged.2d.12Feb19.g++.1 examples/jagged/log.jagged.2d.12Feb19.g++.4 examples/jagged/log.jagged.2d.distributed.12Feb19.g++.1 examples/jagged/log.jagged.2d.distributed.12Feb19.g++.4 examples/sphere/in.sphere examples/sphere/in.sphere.distributed examples/sphere/log.24Aug20.mpi_1.sphere examples/sphere/log.24Aug20.mpi_1.sphere.distributed examples/sphere/log.24Aug20.mpi_4.sphere examples/sphere/log.24Aug20.mpi_4.sphere.distributed examples/sphere/log.sphere.16Dec14.g++.1 examples/sphere/log.sphere.16Dec14.g++.4 examples/sphere/log.sphere.distributed.12Feb19.g++.1 examples/sphere/log.sphere.distributed.12Feb19.g++.4 examples/spiky/in.spiky examples/spiky/log.24Aug20.mpi_1.spiky examples/spiky/log.24Aug20.mpi_4.spiky examples/spiky/log.spiky.16Dec14.g++.1 examples/spiky/log.spiky.16Dec14.g++.4 examples/step/in.step examples/step/log.24Aug20.mpi_1.step examples/step/log.24Aug20.mpi_4.step examples/step/log.step.16Dec14.g++.1 examples/step/log.step.16Dec14.g++.4 examples/surf/in.surf.add examples/surf/in.surf.move examples/surf/in.surf.remove examples/surf/in.surf.rotate examples/surf/in.surf.slide examples/surf/log.24Aug20.mpi_1.surf.add examples/surf/log.24Aug20.mpi_1.surf.move examples/surf/log.24Aug20.mpi_1.surf.remove examples/surf/log.24Aug20.mpi_1.surf.rotate examples/surf/log.24Aug20.mpi_1.surf.slide examples/surf/log.24Aug20.mpi_4.surf.add examples/surf/log.24Aug20.mpi_4.surf.move examples/surf/log.24Aug20.mpi_4.surf.remove examples/surf/log.24Aug20.mpi_4.surf.rotate examples/surf/log.24Aug20.mpi_4.surf.slide examples/surf/log.surf.add.21Aug15.g++.1 examples/surf/log.surf.add.21Aug15.g++.4 examples/surf/log.surf.move.21Aug15.g++.1 examples/surf/log.surf.move.21Aug15.g++.4 examples/surf/log.surf.remove.21Aug15.g++.1 examples/surf/log.surf.remove.21Aug15.g++.4 examples/surf/log.surf.rotate.22Sep15.g++.1 examples/surf/log.surf.rotate.22Sep15.g++.4 examples/surf/log.surf.slide.21Aug15.g++.1 examples/surf/log.surf.slide.21Aug15.g++.4 examples/surf_collide/in.beam.cll examples/surf_collide/in.beam.diffuse examples/surf_collide/in.beam.impulsive examples/surf_collide/in.beam.specular examples/surf_collide/in.beam.td examples/surf_collide/in.circle.cll examples/surf_collide/in.circle.diffuse examples/surf_collide/in.circle.impulsive examples/surf_collide/in.circle.specular examples/surf_collide/in.circle.td examples/surf_collide/log.24Aug20.mpi_1.beam.cll examples/surf_collide/log.24Aug20.mpi_1.beam.diffuse examples/surf_collide/log.24Aug20.mpi_1.beam.impulsive examples/surf_collide/log.24Aug20.mpi_1.beam.specular examples/surf_collide/log.24Aug20.mpi_1.beam.td examples/surf_collide/log.24Aug20.mpi_1.circle.cll examples/surf_collide/log.24Aug20.mpi_1.circle.diffuse examples/surf_collide/log.24Aug20.mpi_1.circle.impulsive examples/surf_collide/log.24Aug20.mpi_1.circle.specular examples/surf_collide/log.24Aug20.mpi_1.circle.td examples/surf_collide/log.24Aug20.mpi_4.beam.cll examples/surf_collide/log.24Aug20.mpi_4.beam.diffuse examples/surf_collide/log.24Aug20.mpi_4.beam.impulsive examples/surf_collide/log.24Aug20.mpi_4.beam.specular examples/surf_collide/log.24Aug20.mpi_4.beam.td examples/surf_collide/log.24Aug20.mpi_4.circle.cll examples/surf_collide/log.24Aug20.mpi_4.circle.diffuse examples/surf_collide/log.24Aug20.mpi_4.circle.impulsive examples/surf_collide/log.24Aug20.mpi_4.circle.specular examples/surf_collide/log.24Aug20.mpi_4.circle.td examples/surf_collide/log.beam.cll.18Dec19.g++.1 examples/surf_collide/log.beam.cll.18Dec19.g++.4 examples/surf_collide/log.beam.diffuse.18Dec19.g++.1 examples/surf_collide/log.beam.diffuse.18Dec19.g++.4 examples/surf_collide/log.beam.impulsive.18Dec19.g++.1 examples/surf_collide/log.beam.impulsive.18Dec19.g++.4 examples/surf_collide/log.beam.specular.18Dec19.g++.1 examples/surf_collide/log.beam.specular.18Dec19.g++.4 examples/surf_collide/log.beam.td.18Dec19.g++.1 examples/surf_collide/log.beam.td.18Dec19.g++.4 examples/surf_collide/log.circle.cll.18Dec19.g++.1 examples/surf_collide/log.circle.cll.18Dec19.g++.4 examples/surf_collide/log.circle.diffuse.18Dec19.g++.1 examples/surf_collide/log.circle.diffuse.18Dec19.g++.4 examples/surf_collide/log.circle.impulsive.18Dec19.g++.1 examples/surf_collide/log.circle.impulsive.18Dec19.g++.4 examples/surf_collide/log.circle.specular.18Dec19.g++.1 examples/surf_collide/log.circle.specular.18Dec19.g++.4 examples/surf_collide/log.circle.td.18Dec19.g++.1 examples/surf_collide/log.circle.td.18Dec19.g++.4 examples/vibrate/in.vibrate examples/vibrate/log.24Aug20.mpi_1.vibrate examples/vibrate/log.24Aug20.mpi_4.vibrate examples/vibrate/log.vibrate.21Jun18.g++.1 examples/vibrate/log.vibrate.21Jun18.g++.4 src/FFT/compute_fft_grid.cpp src/FFT/compute_fft_grid.h src/FFT/fft2d.cpp src/FFT/fft2d.h src/FFT/fft2d_wrap.cpp src/FFT/fft2d_wrap.h src/FFT/fft3d.cpp src/FFT/fft3d.h src/FFT/fft3d_wrap.cpp src/FFT/fft3d_wrap.h src/FFT/fftdata.h src/FFT/kissfft.h src/FFT/pack2d.h src/FFT/pack3d.h src/FFT/remap2d.cpp src/FFT/remap2d.h src/FFT/remap3d.cpp src/FFT/remap3d.h src/KOKKOS/collide_vss_kokkos.cpp src/KOKKOS/collide_vss_kokkos.h src/KOKKOS/comm_kokkos.cpp src/KOKKOS/comm_kokkos.h src/KOKKOS/compute_boundary_kokkos.cpp src/KOKKOS/compute_boundary_kokkos.h src/KOKKOS/compute_count_kokkos.cpp src/KOKKOS/compute_distsurf_grid_kokkos.cpp src/KOKKOS/compute_distsurf_grid_kokkos.h src/KOKKOS/compute_eflux_grid_kokkos.cpp src/KOKKOS/compute_grid_kokkos.cpp src/KOKKOS/compute_grid_kokkos.h src/KOKKOS/compute_ke_particle_kokkos.cpp src/KOKKOS/compute_ke_particle_kokkos.h src/KOKKOS/compute_lambda_grid_kokkos.cpp src/KOKKOS/compute_lambda_grid_kokkos.h src/KOKKOS/compute_pflux_grid_kokkos.cpp src/KOKKOS/compute_property_grid_kokkos.cpp src/KOKKOS/compute_property_grid_kokkos.h src/KOKKOS/compute_sonine_grid_kokkos.cpp src/KOKKOS/compute_surf_kokkos.cpp src/KOKKOS/compute_surf_kokkos.h src/KOKKOS/compute_temp_kokkos.cpp src/KOKKOS/compute_temp_kokkos.h src/KOKKOS/compute_thermal_grid_kokkos.cpp src/KOKKOS/compute_thermal_grid_kokkos.h src/KOKKOS/create_particles_kokkos.cpp src/KOKKOS/create_particles_kokkos.h src/KOKKOS/domain_kokkos.h src/KOKKOS/fix_adapt_kokkos.cpp src/KOKKOS/fix_adapt_kokkos.h src/KOKKOS/fix_ave_grid_kokkos.cpp src/KOKKOS/fix_ave_grid_kokkos.h src/KOKKOS/fix_ave_histo_kokkos.cpp src/KOKKOS/fix_ave_histo_kokkos.h src/KOKKOS/fix_ave_histo_weight_kokkos.cpp src/KOKKOS/fix_ave_histo_weight_kokkos.h src/KOKKOS/fix_balance_kokkos.cpp src/KOKKOS/fix_balance_kokkos.h src/KOKKOS/fix_emit_face_kokkos.cpp src/KOKKOS/fix_emit_face_kokkos.h src/KOKKOS/fix_grid_check_kokkos.cpp src/KOKKOS/fix_grid_check_kokkos.h src/KOKKOS/fix_move_surf_kokkos.cpp src/KOKKOS/fix_move_surf_kokkos.h src/KOKKOS/geometry_kokkos.h src/KOKKOS/grid_id_kokkos.cpp src/KOKKOS/grid_kokkos.cpp src/KOKKOS/grid_kokkos.h src/KOKKOS/irregular_kokkos.cpp src/KOKKOS/irregular_kokkos.h src/KOKKOS/kokkos.cpp src/KOKKOS/kokkos.h src/KOKKOS/kokkos_base.h src/KOKKOS/kokkos_copy.h src/KOKKOS/kokkos_scan.cpp src/KOKKOS/kokkos_type.h src/KOKKOS/math_extra_kokkos.h src/KOKKOS/memory_kokkos.h src/KOKKOS/modify_kokkos.cpp src/KOKKOS/modify_kokkos.h src/KOKKOS/particle_kokkos.cpp src/KOKKOS/particle_kokkos.h src/KOKKOS/rand_pool_wrap.cpp src/KOKKOS/rand_pool_wrap.h src/KOKKOS/react_bird_kokkos.cpp src/KOKKOS/react_bird_kokkos.h src/KOKKOS/react_tce_kokkos.cpp src/KOKKOS/react_tce_kokkos.h src/KOKKOS/read_surf_kokkos.cpp src/KOKKOS/read_surf_kokkos.h src/KOKKOS/surf_collide_diffuse_kokkos.cpp src/KOKKOS/surf_collide_diffuse_kokkos.h src/KOKKOS/surf_collide_piston_kokkos.cpp src/KOKKOS/surf_collide_piston_kokkos.h src/KOKKOS/surf_collide_specular_kokkos.cpp src/KOKKOS/surf_collide_specular_kokkos.h src/KOKKOS/surf_collide_transparent_kokkos.cpp src/KOKKOS/surf_collide_transparent_kokkos.h src/KOKKOS/surf_collide_vanish_kokkos.cpp src/KOKKOS/surf_collide_vanish_kokkos.h src/KOKKOS/surf_kokkos.cpp src/KOKKOS/surf_kokkos.h src/KOKKOS/update_kokkos.cpp src/KOKKOS/update_kokkos.h src/Makefile src/Obj_mpi_debug/Makefile src/Obj_mpi_debug/Makefile.package src/Obj_mpi_debug/Makefile.package.settings src/Obj_mpi_debug/adapt_grid.d src/Obj_mpi_debug/adapt_grid.o src/Obj_mpi_debug/balance_grid.d src/Obj_mpi_debug/balance_grid.o src/Obj_mpi_debug/collide.d src/Obj_mpi_debug/collide.o src/Obj_mpi_debug/collide_vss.d src/Obj_mpi_debug/collide_vss.o src/Obj_mpi_debug/comm.d src/Obj_mpi_debug/comm.o src/Obj_mpi_debug/compute.d src/Obj_mpi_debug/compute.o src/Obj_mpi_debug/compute_boundary.d src/Obj_mpi_debug/compute_boundary.o src/Obj_mpi_debug/compute_count.d src/Obj_mpi_debug/compute_count.o src/Obj_mpi_debug/compute_distsurf_grid.d src/Obj_mpi_debug/compute_distsurf_grid.o src/Obj_mpi_debug/compute_eflux_grid.d src/Obj_mpi_debug/compute_eflux_grid.o src/Obj_mpi_debug/compute_grid.d src/Obj_mpi_debug/compute_grid.o src/Obj_mpi_debug/compute_isurf_grid.d src/Obj_mpi_debug/compute_isurf_grid.o src/Obj_mpi_debug/compute_ke_particle.d src/Obj_mpi_debug/compute_ke_particle.o src/Obj_mpi_debug/compute_lambda_grid.d src/Obj_mpi_debug/compute_lambda_grid.o src/Obj_mpi_debug/compute_pflux_grid.d src/Obj_mpi_debug/compute_pflux_grid.o src/Obj_mpi_debug/compute_property_grid.d src/Obj_mpi_debug/compute_property_grid.o src/Obj_mpi_debug/compute_react_boundary.d src/Obj_mpi_debug/compute_react_boundary.o src/Obj_mpi_debug/compute_react_isurf_grid.d src/Obj_mpi_debug/compute_react_isurf_grid.o src/Obj_mpi_debug/compute_react_surf.d src/Obj_mpi_debug/compute_react_surf.o src/Obj_mpi_debug/compute_reduce.d src/Obj_mpi_debug/compute_reduce.o src/Obj_mpi_debug/compute_sonine_grid.d src/Obj_mpi_debug/compute_sonine_grid.o src/Obj_mpi_debug/compute_surf.d src/Obj_mpi_debug/compute_surf.o src/Obj_mpi_debug/compute_temp.d src/Obj_mpi_debug/compute_temp.o src/Obj_mpi_debug/compute_thermal_grid.d src/Obj_mpi_debug/compute_thermal_grid.o src/Obj_mpi_debug/compute_tvib_grid.d src/Obj_mpi_debug/compute_tvib_grid.o src/Obj_mpi_debug/create_box.d src/Obj_mpi_debug/create_box.o src/Obj_mpi_debug/create_grid.d src/Obj_mpi_debug/create_grid.o src/Obj_mpi_debug/create_particles.d src/Obj_mpi_debug/create_particles.o src/Obj_mpi_debug/cut2d.d src/Obj_mpi_debug/cut2d.o src/Obj_mpi_debug/cut3d.d src/Obj_mpi_debug/cut3d.o src/Obj_mpi_debug/domain.d src/Obj_mpi_debug/domain.o src/Obj_mpi_debug/dump.d src/Obj_mpi_debug/dump.o src/Obj_mpi_debug/dump_grid.d src/Obj_mpi_debug/dump_grid.o src/Obj_mpi_debug/dump_image.d src/Obj_mpi_debug/dump_image.o src/Obj_mpi_debug/dump_movie.d src/Obj_mpi_debug/dump_movie.o src/Obj_mpi_debug/dump_particle.d src/Obj_mpi_debug/dump_particle.o src/Obj_mpi_debug/dump_surf.d src/Obj_mpi_debug/dump_surf.o src/Obj_mpi_debug/error.d src/Obj_mpi_debug/error.o src/Obj_mpi_debug/finish.d src/Obj_mpi_debug/finish.o src/Obj_mpi_debug/fix.d src/Obj_mpi_debug/fix.o src/Obj_mpi_debug/fix_ablate.d src/Obj_mpi_debug/fix_ablate.o src/Obj_mpi_debug/fix_adapt.d src/Obj_mpi_debug/fix_adapt.o src/Obj_mpi_debug/fix_ambipolar.d src/Obj_mpi_debug/fix_ambipolar.o src/Obj_mpi_debug/fix_ave_grid.d src/Obj_mpi_debug/fix_ave_grid.o src/Obj_mpi_debug/fix_ave_histo.d src/Obj_mpi_debug/fix_ave_histo.o src/Obj_mpi_debug/fix_ave_histo_weight.d src/Obj_mpi_debug/fix_ave_histo_weight.o src/Obj_mpi_debug/fix_ave_surf.d src/Obj_mpi_debug/fix_ave_surf.o src/Obj_mpi_debug/fix_ave_time.d src/Obj_mpi_debug/fix_ave_time.o src/Obj_mpi_debug/fix_balance.d src/Obj_mpi_debug/fix_balance.o src/Obj_mpi_debug/fix_emit.d src/Obj_mpi_debug/fix_emit.o src/Obj_mpi_debug/fix_emit_face.d src/Obj_mpi_debug/fix_emit_face.o src/Obj_mpi_debug/fix_emit_face_file.d src/Obj_mpi_debug/fix_emit_face_file.o src/Obj_mpi_debug/fix_emit_surf.d src/Obj_mpi_debug/fix_emit_surf.o src/Obj_mpi_debug/fix_grid_check.d src/Obj_mpi_debug/fix_grid_check.o src/Obj_mpi_debug/fix_move_surf.d src/Obj_mpi_debug/fix_move_surf.o src/Obj_mpi_debug/fix_print.d src/Obj_mpi_debug/fix_print.o src/Obj_mpi_debug/fix_vibmode.d src/Obj_mpi_debug/fix_vibmode.o src/Obj_mpi_debug/geometry.d src/Obj_mpi_debug/geometry.o src/Obj_mpi_debug/grid.d src/Obj_mpi_debug/grid.o src/Obj_mpi_debug/grid_adapt.d src/Obj_mpi_debug/grid_adapt.o src/Obj_mpi_debug/grid_comm.d src/Obj_mpi_debug/grid_comm.o src/Obj_mpi_debug/grid_id.d src/Obj_mpi_debug/grid_id.o src/Obj_mpi_debug/grid_surf.d src/Obj_mpi_debug/grid_surf.o src/Obj_mpi_debug/hashlittle.d src/Obj_mpi_debug/hashlittle.o src/Obj_mpi_debug/image.d src/Obj_mpi_debug/image.o src/Obj_mpi_debug/input.d src/Obj_mpi_debug/input.o src/Obj_mpi_debug/irregular.d src/Obj_mpi_debug/irregular.o src/Obj_mpi_debug/library.d src/Obj_mpi_debug/library.o src/Obj_mpi_debug/main.d src/Obj_mpi_debug/main.o src/Obj_mpi_debug/marching_cubes.d src/Obj_mpi_debug/marching_cubes.o src/Obj_mpi_debug/marching_squares.d src/Obj_mpi_debug/marching_squares.o src/Obj_mpi_debug/math_extra.d src/Obj_mpi_debug/math_extra.o src/Obj_mpi_debug/memory.d src/Obj_mpi_debug/memory.o src/Obj_mpi_debug/mixture.d src/Obj_mpi_debug/mixture.o src/Obj_mpi_debug/modify.d src/Obj_mpi_debug/modify.o src/Obj_mpi_debug/move_surf.d src/Obj_mpi_debug/move_surf.o src/Obj_mpi_debug/output.d src/Obj_mpi_debug/output.o src/Obj_mpi_debug/particle.d src/Obj_mpi_debug/particle.o src/Obj_mpi_debug/random_mars.d src/Obj_mpi_debug/random_mars.o src/Obj_mpi_debug/random_park.d src/Obj_mpi_debug/random_park.o src/Obj_mpi_debug/rcb.d src/Obj_mpi_debug/rcb.o src/Obj_mpi_debug/react.d src/Obj_mpi_debug/react.o src/Obj_mpi_debug/react_bird.d src/Obj_mpi_debug/react_bird.o src/Obj_mpi_debug/react_qk.d src/Obj_mpi_debug/react_qk.o src/Obj_mpi_debug/react_tce.d src/Obj_mpi_debug/react_tce.o src/Obj_mpi_debug/react_tce_qk.d src/Obj_mpi_debug/react_tce_qk.o src/Obj_mpi_debug/read_grid.d src/Obj_mpi_debug/read_grid.o src/Obj_mpi_debug/read_isurf.d src/Obj_mpi_debug/read_isurf.o src/Obj_mpi_debug/read_particles.d src/Obj_mpi_debug/read_particles.o src/Obj_mpi_debug/read_restart.d src/Obj_mpi_debug/read_restart.o src/Obj_mpi_debug/read_surf.d src/Obj_mpi_debug/read_surf.o src/Obj_mpi_debug/region.d src/Obj_mpi_debug/region.o src/Obj_mpi_debug/region_block.d src/Obj_mpi_debug/region_block.o src/Obj_mpi_debug/region_cylinder.d src/Obj_mpi_debug/region_cylinder.o src/Obj_mpi_debug/region_intersect.d src/Obj_mpi_debug/region_intersect.o src/Obj_mpi_debug/region_plane.d src/Obj_mpi_debug/region_plane.o src/Obj_mpi_debug/region_sphere.d src/Obj_mpi_debug/region_sphere.o src/Obj_mpi_debug/region_union.d src/Obj_mpi_debug/region_union.o src/Obj_mpi_debug/remove_surf.d src/Obj_mpi_debug/remove_surf.o src/Obj_mpi_debug/run.d src/Obj_mpi_debug/run.o src/Obj_mpi_debug/scale_particles.d src/Obj_mpi_debug/scale_particles.o src/Obj_mpi_debug/sparta.d src/Obj_mpi_debug/sparta.o src/Obj_mpi_debug/stats.d src/Obj_mpi_debug/stats.o src/Obj_mpi_debug/surf.d src/Obj_mpi_debug/surf.o src/Obj_mpi_debug/surf_collide.d src/Obj_mpi_debug/surf_collide.o src/Obj_mpi_debug/surf_collide_cll.d src/Obj_mpi_debug/surf_collide_cll.o src/Obj_mpi_debug/surf_collide_diffuse.d src/Obj_mpi_debug/surf_collide_diffuse.o src/Obj_mpi_debug/surf_collide_impulsive.d src/Obj_mpi_debug/surf_collide_impulsive.o src/Obj_mpi_debug/surf_collide_piston.d src/Obj_mpi_debug/surf_collide_piston.o src/Obj_mpi_debug/surf_collide_specular.d src/Obj_mpi_debug/surf_collide_specular.o src/Obj_mpi_debug/surf_collide_td.d src/Obj_mpi_debug/surf_collide_td.o src/Obj_mpi_debug/surf_collide_transparent.d src/Obj_mpi_debug/surf_collide_transparent.o src/Obj_mpi_debug/surf_collide_vanish.d src/Obj_mpi_debug/surf_collide_vanish.o src/Obj_mpi_debug/surf_react.d src/Obj_mpi_debug/surf_react.o src/Obj_mpi_debug/surf_react_global.d src/Obj_mpi_debug/surf_react_global.o src/Obj_mpi_debug/surf_react_prob.d src/Obj_mpi_debug/surf_react_prob.o src/Obj_mpi_debug/timer.d src/Obj_mpi_debug/timer.o src/Obj_mpi_debug/universe.d src/Obj_mpi_debug/universe.o src/Obj_mpi_debug/update.d src/Obj_mpi_debug/update.o src/Obj_mpi_debug/variable.d src/Obj_mpi_debug/variable.o src/Obj_mpi_debug/write_grid.d src/Obj_mpi_debug/write_grid.o src/Obj_mpi_debug/write_isurf.d src/Obj_mpi_debug/write_isurf.o src/Obj_mpi_debug/write_restart.d src/Obj_mpi_debug/write_restart.o src/Obj_mpi_debug/write_surf.d src/Obj_mpi_debug/write_surf.o src/Package.sh src/STUBS/mpi.h src/accelerator_kokkos.h src/adapt_grid.cpp src/adapt_grid.h src/balance_grid.cpp src/balance_grid.h src/collide.cpp src/collide.h src/collide_vss.cpp src/collide_vss.h src/comm.cpp src/comm.h src/compute.cpp src/compute.h src/compute_boundary.cpp src/compute_boundary.h src/compute_count.cpp src/compute_count.h src/compute_eflux_grid.cpp src/compute_eflux_grid.h src/compute_grid.cpp src/compute_grid.h src/compute_isurf_grid.cpp src/compute_isurf_grid.h src/compute_ke_particle.cpp src/compute_ke_particle.h src/compute_lambda_grid.cpp src/compute_lambda_grid.h src/compute_pflux_grid.cpp src/compute_pflux_grid.h src/compute_property_grid.cpp src/compute_property_grid.h src/compute_react_boundary.cpp src/compute_react_boundary.h src/compute_react_isurf_grid.cpp src/compute_react_isurf_grid.h src/compute_react_surf.cpp src/compute_react_surf.h src/compute_reduce.cpp src/compute_reduce.h src/compute_sonine_grid.cpp src/compute_sonine_grid.h src/compute_surf.cpp src/compute_surf.h src/compute_temp.cpp src/compute_temp.h src/compute_thermal_grid.cpp src/compute_thermal_grid.h src/compute_tvib_grid.cpp src/compute_tvib_grid.h src/create_box.cpp src/create_box.h src/create_grid.cpp src/create_grid.h src/create_particles.cpp src/create_particles.h src/cut2d.cpp src/cut2d.h src/cut3d.cpp src/cut3d.h src/domain.cpp src/domain.h src/dump.cpp src/dump.h src/dump_grid.cpp src/dump_grid.h src/dump_image.cpp src/dump_image.h src/dump_movie.cpp src/dump_movie.h src/dump_particle.cpp src/dump_particle.h src/dump_surf.cpp src/dump_surf.h src/error.cpp src/error.h src/finish.cpp src/finish.h src/fix.cpp src/fix.h src/fix_ablate.cpp src/fix_ablate.h src/fix_adapt.cpp src/fix_adapt.h src/fix_adapt.html src/fix_adapt.txt src/fix_ambipolar.cpp src/fix_ambipolar.h src/fix_ave_grid.cpp src/fix_ave_grid.h src/fix_ave_histo.cpp src/fix_ave_histo.h src/fix_ave_histo_weight.cpp src/fix_ave_histo_weight.h src/fix_ave_surf.cpp src/fix_ave_surf.h src/fix_ave_time.cpp src/fix_ave_time.h src/fix_balance.cpp src/fix_balance.h src/fix_emit.cpp src/fix_emit.h src/fix_emit_face.cpp src/fix_emit_face.h src/fix_emit_face_file.cpp src/fix_emit_face_file.h src/fix_emit_surf.cpp src/fix_emit_surf.h src/fix_grid_check.cpp src/fix_grid_check.h src/fix_move_surf.cpp src/fix_move_surf.h src/fix_print.cpp src/fix_print.h src/fix_vibmode.cpp src/fix_vibmode.h src/geometry.cpp src/geometry.h src/grid.cpp src/grid.h src/grid_adapt.cpp src/grid_adapt.h src/grid_comm.cpp src/grid_comm.h src/grid_id.cpp src/grid_id.h src/grid_surf.cpp src/grid_surf.h src/hash3.h src/hash_options.h src/hashlittle.cpp src/image.cpp src/image.h src/input.cpp src/input.h src/irregular.cpp src/irregular.h src/library.cpp src/library.h src/main.cpp src/marching_cubes.cpp src/marching_cubes.h src/marching_squares.cpp src/marching_squares.h src/math_const.h src/math_extra.cpp src/math_extra.h src/memory.cpp src/memory.h src/mixture.cpp src/mixture.h src/modify.cpp src/modify.h src/move_surf.cpp src/move_surf.h src/my_page.h src/my_vec.h src/output.cpp src/output.h src/particle.cpp src/particle.h src/pointers.h src/random_mars.cpp src/random_mars.h src/random_park.cpp src/random_park.h src/rcb.cpp src/rcb.h src/react.cpp src/react.h src/react_bird.cpp src/react_bird.h src/react_qk.cpp src/react_qk.h src/react_tce.cpp src/react_tce.h src/react_tce_qk.cpp src/react_tce_qk.h src/read_grid.cpp src/read_grid.h src/read_isurf.cpp src/read_isurf.h src/read_particles.cpp src/read_particles.h src/read_restart.cpp src/read_restart.h src/read_surf.cpp src/read_surf.h src/region.cpp src/region.h src/region_block.cpp src/region_block.h src/region_cylinder.cpp src/region_cylinder.h src/region_intersect.cpp src/region_intersect.h src/region_plane.cpp src/region_plane.h src/region_sphere.cpp src/region_sphere.h src/region_union.cpp src/region_union.h src/remove_surf.cpp src/remove_surf.h src/run.cpp src/run.h src/scale_particles.cpp src/scale_particles.h src/spa_mpi_debug src/sparta.cpp src/sparta.h src/sparta_masks.h src/spatype.h src/stats.cpp src/stats.h src/surf.cpp src/surf.h src/surf_collide.cpp src/surf_collide.h src/surf_collide_cll.cpp src/surf_collide_cll.h src/surf_collide_diffuse.cpp src/surf_collide_diffuse.h src/surf_collide_impulsive.cpp src/surf_collide_impulsive.h src/surf_collide_piston.cpp src/surf_collide_piston.h src/surf_collide_specular.cpp src/surf_collide_specular.h src/surf_collide_td.cpp src/surf_collide_td.h src/surf_collide_transparent.cpp src/surf_collide_transparent.h src/surf_collide_vanish.cpp src/surf_collide_vanish.h src/surf_react.cpp src/surf_react.h src/surf_react_global.cpp src/surf_react_global.h src/surf_react_prob.cpp src/surf_react_prob.h src/timer.cpp src/timer.h src/universe.cpp src/universe.h src/update.cpp src/update.h src/variable.cpp src/variable.h src/version.h src/write_grid.cpp src/write_grid.h src/write_isurf.cpp src/write_isurf.h src/write_restart.cpp src/write_restart.h src/write_surf.cpp src/write_surf.h tools/paraview/grid2paraview.py tools/paraview/surf2paraview.py tools/testing/olog.py tools/testing/rebless.sh tools/testing/regression.py