SPARTA (23 Dec 2017) KOKKOS mode is enabled (../kokkos.cpp:39) using 0 GPU(s) per MPI task using 1 thread(s) per MPI task package kokkos package kokkos reduction parallel/reduce comm classic # advect particles via VSS collisional flow on a uniform grid # particles reflect off global box boundaries variable x index 10 variable y index 10 variable z index 10 variable lx equal $x*1.0e-5 variable lx equal 32*1.0e-5 variable ly equal $y*1.0e-5 variable ly equal 40*1.0e-5 variable lz equal $z*1.0e-5 variable lz equal 40*1.0e-5 variable n equal 10*$x*$y*$z variable n equal 10*32*$y*$z variable n equal 10*32*40*$z variable n equal 10*32*40*40 seed 12345 dimension 3 global gridcut 1.0e-5 boundary rr rr rr create_box 0 ${lx} 0 ${ly} 0 ${lz} create_box 0 0.00032 0 ${ly} 0 ${lz} create_box 0 0.00032 0 0.0004 0 ${lz} create_box 0 0.00032 0 0.0004 0 0.0004 Created orthogonal box = (0 0 0) to (0.00032 0.0004 0.0004) create_grid $x $y $z create_grid 32 $y $z create_grid 32 40 $z create_grid 32 40 40 WARNING: Could not acquire nearby ghost cells b/c grid partition is not clumped (../grid.cpp:381) Created 51200 child grid cells parent cells = 1 CPU time = 0.0139768 secs create/ghost percent = 56.4864 43.5136 balance_grid rcb part Balance grid migrated 50400 cells CPU time = 0.079922 secs reassign/sort/migrate/ghost percent = 56.22 0.0823347 22.7274 20.9703 species ar.species Ar mixture air Ar vstream 0.0 0.0 0.0 temp 273.15 global nrho 7.07043E22 global fnum 7.07043E6 collide vss air ar.vss create_particles air n $n create_particles air n 512000 Created 512000 particles CPU time = 0.0261152 secs stats 100 compute temp temp stats_style step cpu np nattempt ncoll c_temp # first equilibrate with large timestep to unsort particles # then benchmark with normal timestep timestep 7.00E-8 run 30 Memory usage per proc in Mbytes: particles (ave,min,max) = 1.6875 1.6875 1.6875 grid (ave,min,max) = 1.51388 1.51388 1.51388 surf (ave,min,max) = 0 0 0 total (ave,min,max) = 3.20138 3.20138 3.20138 Step CPU Np Natt Ncoll c_temp 0 0 512000 0 0 273.45702 30 0.28519797 512000 513178 360862 273.45702 Loop time of 0.285333 on 128 procs for 30 steps with 512000 particles Particle moves = 15360000 (15.4M) Cells touched = 75767995 (75.8M) Particle comms = 6289244 (6.29M) Boundary collides = 1663807 (1.66M) Boundary exits = 0 (0K) SurfColl checks = 0 (0K) SurfColl occurs = 0 (0K) Surf reactions = 0 (0K) Collide attempts = 14873139 (14.9M) Collide occurs = 10801608 (10.8M) Reactions = 0 (0K) Particles stuck = 0 Particle-moves/CPUsec/proc: 420561 Particle-moves/step: 512000 Cell-touches/particle/step: 4.93281 Particle comm iterations/step: 3.26667 Particle fraction communicated: 0.409456 Particle fraction colliding with boundary: 0.108321 Particle fraction exiting boundary: 0 Surface-checks/particle/step: 0 Surface-collisions/particle/step: 0 Surf-reactions/particle/step: 0 Collision-attempts/particle/step: 0.968303 Collisions/particle/step: 0.70323 Reactions/particle/step: 0 Move time (%) = 0.140191 (49.1323) Coll time (%) = 0.0771119 (27.0252) Sort time (%) = 0.00728359 (2.55266) Comm time (%) = 0.0600983 (21.0625) Modfy time (%) = 0 (0) Outpt time (%) = 0.000435535 (0.152641) Other time (%) = 0.000212831 (0.0745905) Particles: 4000 ave 4148 max 3844 min Histogram: 2 2 15 24 15 28 19 12 6 5 Cells: 400 ave 400 max 400 min Histogram: 128 0 0 0 0 0 0 0 0 0 GhostCell: 719.344 ave 1112 max 248 min Histogram: 2 10 13 13 17 20 11 20 6 16 EmptyCell: 332.945 ave 672 max 54 min Histogram: 11 22 14 19 4 17 10 13 11 7 timestep 7.00E-9 run $t run 100 Memory usage per proc in Mbytes: particles (ave,min,max) = 1.6875 1.6875 1.6875 grid (ave,min,max) = 1.51388 1.51388 1.51388 surf (ave,min,max) = 0 0 0 total (ave,min,max) = 3.20138 3.20138 3.20138 Step CPU Np Natt Ncoll c_temp 30 0 512000 513178 360862 273.45702 100 0.12242699 512000 49240 36253 273.45702 130 0.17480302 512000 49907 36274 273.45702 Loop time of 0.174939 on 128 procs for 100 steps with 512000 particles Particle moves = 51200000 (51.2M) Cells touched = 71117127 (71.1M) Particle comms = 2313423 (2.31M) Boundary collides = 553459 (0.553M) Boundary exits = 0 (0K) SurfColl checks = 0 (0K) SurfColl occurs = 0 (0K) Surf reactions = 0 (0K) Collide attempts = 4797087 (4.8M) Collide occurs = 3593425 (3.59M) Reactions = 0 (0K) Particles stuck = 0 Particle-moves/CPUsec/proc: 2.28652e+06 Particle-moves/step: 512000 Cell-touches/particle/step: 1.38901 Particle comm iterations/step: 1 Particle fraction communicated: 0.045184 Particle fraction colliding with boundary: 0.0108097 Particle fraction exiting boundary: 0 Surface-checks/particle/step: 0 Surface-collisions/particle/step: 0 Surf-reactions/particle/step: 0 Collision-attempts/particle/step: 0.0936931 Collisions/particle/step: 0.0701841 Reactions/particle/step: 0 Move time (%) = 0.0891165 (50.9416) Coll time (%) = 0.0368988 (21.0924) Sort time (%) = 0.0171285 (9.79117) Comm time (%) = 0.0303819 (17.3672) Modfy time (%) = 0 (0) Outpt time (%) = 0.000762636 (0.435945) Other time (%) = 0.000650279 (0.371718) Particles: 4000 ave 4118 max 3830 min Histogram: 2 3 6 6 24 21 26 22 13 5 Cells: 400 ave 400 max 400 min Histogram: 128 0 0 0 0 0 0 0 0 0 GhostCell: 719.344 ave 1112 max 248 min Histogram: 2 10 13 13 17 20 11 20 6 16 EmptyCell: 332.945 ave 672 max 54 min Histogram: 11 22 14 19 4 17 10 13 11 7