SPARTA (23 Dec 2017) KOKKOS mode is enabled (../kokkos.cpp:39) using 0 GPU(s) per MPI task using 1 thread(s) per MPI task package kokkos package kokkos reduction parallel/reduce comm classic # advect particles via VSS collisional flow on a uniform grid # particles reflect off global box boundaries variable x index 10 variable y index 10 variable z index 10 variable lx equal $x*1.0e-5 variable lx equal 64*1.0e-5 variable ly equal $y*1.0e-5 variable ly equal 80*1.0e-5 variable lz equal $z*1.0e-5 variable lz equal 80*1.0e-5 variable n equal 10*$x*$y*$z variable n equal 10*64*$y*$z variable n equal 10*64*80*$z variable n equal 10*64*80*80 seed 12345 dimension 3 global gridcut 1.0e-5 boundary rr rr rr create_box 0 ${lx} 0 ${ly} 0 ${lz} create_box 0 0.00064 0 ${ly} 0 ${lz} create_box 0 0.00064 0 0.0008 0 ${lz} create_box 0 0.00064 0 0.0008 0 0.0008 Created orthogonal box = (0 0 0) to (0.00064 0.0008 0.0008) create_grid $x $y $z create_grid 64 $y $z create_grid 64 80 $z create_grid 64 80 80 WARNING: Could not acquire nearby ghost cells b/c grid partition is not clumped (../grid.cpp:381) Created 409600 child grid cells parent cells = 1 CPU time = 0.00719714 secs create/ghost percent = 70.0301 29.9699 balance_grid rcb part Balance grid migrated 403200 cells CPU time = 0.0506048 secs reassign/sort/migrate/ghost percent = 31.5856 0.74534 31.309 36.3601 species ar.species Ar mixture air Ar vstream 0.0 0.0 0.0 temp 273.15 global nrho 7.07043E22 global fnum 7.07043E6 collide vss air ar.vss create_particles air n $n create_particles air n 4096000 Created 4096000 particles CPU time = 0.0486021 secs stats 100 compute temp temp stats_style step cpu np nattempt ncoll c_temp # first equilibrate with large timestep to unsort particles # then benchmark with normal timestep timestep 7.00E-8 run 30 Memory usage per proc in Mbytes: particles (ave,min,max) = 7.44173 7.44173 7.44173 grid (ave,min,max) = 2.42208 1.51388 2.45138 surf (ave,min,max) = 0 0 0 total (ave,min,max) = 9.86381 8.9556 9.8931 Step CPU Np Natt Ncoll c_temp 0 0 4096000 0 0 273.04308 30 1.620194 4096000 4110424 2892692 273.04308 Loop time of 1.62022 on 64 procs for 30 steps with 4096000 particles Particle moves = 122880000 (123M) Cells touched = 608294839 (608M) Particle comms = 19128068 (19.1M) Boundary collides = 6649695 (6.65M) Boundary exits = 0 (0K) SurfColl checks = 0 (0K) SurfColl occurs = 0 (0K) Surf reactions = 0 (0K) Collide attempts = 118974820 (119M) Collide occurs = 86384784 (86.4M) Reactions = 0 (0K) Particles stuck = 0 Particle-moves/CPUsec/proc: 1.18502e+06 Particle-moves/step: 4.096e+06 Cell-touches/particle/step: 4.95032 Particle comm iterations/step: 3.03333 Particle fraction communicated: 0.155665 Particle fraction colliding with boundary: 0.0541154 Particle fraction exiting boundary: 0 Surface-checks/particle/step: 0 Surface-collisions/particle/step: 0 Surf-reactions/particle/step: 0 Collision-attempts/particle/step: 0.96822 Collisions/particle/step: 0.703001 Reactions/particle/step: 0 Move time (%) = 0.693805 (42.8216) Coll time (%) = 0.529942 (32.708) Sort time (%) = 0.135287 (8.3499) Comm time (%) = 0.257212 (15.8751) Modfy time (%) = 0 (0) Outpt time (%) = 0.00389082 (0.240141) Other time (%) = 8.45194e-05 (0.00521653) Particles: 64000 ave 64489 max 63308 min Histogram: 3 2 3 8 5 8 13 10 8 4 Cells: 6400 ave 6400 max 6400 min Histogram: 64 0 0 0 0 0 0 0 0 0 GhostCell: 3433.69 ave 5120 max 1538 min Histogram: 2 4 4 12 10 8 8 8 0 8 EmptyCell: 1555.09 ave 2808 max 441 min Histogram: 2 10 0 20 0 14 6 6 4 2 timestep 7.00E-9 run $t run 100 Memory usage per proc in Mbytes: particles (ave,min,max) = 7.44173 7.44173 7.44173 grid (ave,min,max) = 2.42208 1.51388 2.45138 surf (ave,min,max) = 0 0 0 total (ave,min,max) = 9.86381 8.9556 9.8931 Step CPU Np Natt Ncoll c_temp 30 0 4096000 4110424 2892692 273.04308 100 1.3005478 4096000 392998 289331 273.04308 130 1.860703 4096000 398563 290202 273.04308 Loop time of 1.86073 on 64 procs for 100 steps with 4096000 particles Particle moves = 409600000 (410M) Cells touched = 571021537 (571M) Particle comms = 6611667 (6.61M) Boundary collides = 2216795 (2.22M) Boundary exits = 0 (0K) SurfColl checks = 0 (0K) SurfColl occurs = 0 (0K) Surf reactions = 0 (0K) Collide attempts = 38372095 (38.4M) Collide occurs = 28744633 (28.7M) Reactions = 0 (0K) Particles stuck = 0 Particle-moves/CPUsec/proc: 3.43951e+06 Particle-moves/step: 4.096e+06 Cell-touches/particle/step: 1.3941 Particle comm iterations/step: 1 Particle fraction communicated: 0.0161418 Particle fraction colliding with boundary: 0.0054121 Particle fraction exiting boundary: 0 Surface-checks/particle/step: 0 Surface-collisions/particle/step: 0 Surf-reactions/particle/step: 0 Collision-attempts/particle/step: 0.0936819 Collisions/particle/step: 0.0701773 Reactions/particle/step: 0 Move time (%) = 1.05158 (56.5142) Coll time (%) = 0.315039 (16.9309) Sort time (%) = 0.420719 (22.6104) Comm time (%) = 0.0655651 (3.52362) Modfy time (%) = 0 (0) Outpt time (%) = 0.00751234 (0.403731) Other time (%) = 0.000318676 (0.0171264) Particles: 64000 ave 64704 max 63444 min Histogram: 1 3 8 18 16 7 7 1 1 2 Cells: 6400 ave 6400 max 6400 min Histogram: 64 0 0 0 0 0 0 0 0 0 GhostCell: 3433.69 ave 5120 max 1538 min Histogram: 2 4 4 12 10 8 8 8 0 8 EmptyCell: 1555.09 ave 2808 max 441 min Histogram: 2 10 0 20 0 14 6 6 4 2