SPARTA (23 Dec 2017) KOKKOS mode is enabled (../kokkos.cpp:39) using 0 GPU(s) per MPI task using 4 thread(s) per MPI task package kokkos package kokkos reduction parallel/reduce comm classic # advect particles via VSS collisional flow on a uniform grid # particles reflect off global box boundaries variable x index 10 variable y index 10 variable z index 10 variable lx equal $x*1.0e-5 variable lx equal 64*1.0e-5 variable ly equal $y*1.0e-5 variable ly equal 80*1.0e-5 variable lz equal $z*1.0e-5 variable lz equal 80*1.0e-5 variable n equal 10*$x*$y*$z variable n equal 10*64*$y*$z variable n equal 10*64*80*$z variable n equal 10*64*80*80 seed 12345 dimension 3 global gridcut 1.0e-5 boundary rr rr rr create_box 0 ${lx} 0 ${ly} 0 ${lz} create_box 0 0.00064 0 ${ly} 0 ${lz} create_box 0 0.00064 0 0.0008 0 ${lz} create_box 0 0.00064 0 0.0008 0 0.0008 Created orthogonal box = (0 0 0) to (0.00064 0.0008 0.0008) create_grid $x $y $z create_grid 64 $y $z create_grid 64 80 $z create_grid 64 80 80 WARNING: Could not acquire nearby ghost cells b/c grid partition is not clumped (../grid.cpp:381) Created 409600 child grid cells parent cells = 1 CPU time = 0.0142729 secs create/ghost percent = 59.5941 40.4059 balance_grid rcb part Balance grid migrated 403200 cells CPU time = 0.091785 secs reassign/sort/migrate/ghost percent = 36.7531 0.159232 24.0637 39.0239 species ar.species Ar mixture air Ar vstream 0.0 0.0 0.0 temp 273.15 global nrho 7.07043E22 global fnum 7.07043E6 collide vss air ar.vss create_particles air n $n create_particles air n 4096000 Created 4096000 particles CPU time = 0.0650108 secs stats 100 compute temp temp stats_style step cpu np nattempt ncoll c_temp # first equilibrate with large timestep to unsort particles # then benchmark with normal timestep timestep 7.00E-8 run 30 Memory usage per proc in Mbytes: particles (ave,min,max) = 7.44173 7.44173 7.44173 grid (ave,min,max) = 2.42208 1.51388 2.45138 surf (ave,min,max) = 0 0 0 total (ave,min,max) = 9.86381 8.9556 9.8931 Step CPU Np Natt Ncoll c_temp 0 0 4096000 0 0 273.04308 30 1.4878998 4096000 4111014 2892890 273.04308 Loop time of 1.48799 on 64 procs for 30 steps with 4096000 particles Particle moves = 122880000 (123M) Cells touched = 608322806 (608M) Particle comms = 19129033 (19.1M) Boundary collides = 6647024 (6.65M) Boundary exits = 0 (0K) SurfColl checks = 0 (0K) SurfColl occurs = 0 (0K) Surf reactions = 0 (0K) Collide attempts = 118980491 (119M) Collide occurs = 86381349 (86.4M) Reactions = 0 (0K) Particles stuck = 0 Particle-moves/CPUsec/proc: 1.29033e+06 Particle-moves/step: 4.096e+06 Cell-touches/particle/step: 4.95054 Particle comm iterations/step: 3.03333 Particle fraction communicated: 0.155672 Particle fraction colliding with boundary: 0.0540936 Particle fraction exiting boundary: 0 Surface-checks/particle/step: 0 Surface-collisions/particle/step: 0 Surf-reactions/particle/step: 0 Collision-attempts/particle/step: 0.968266 Collisions/particle/step: 0.702973 Reactions/particle/step: 0 Move time (%) = 0.761058 (51.1466) Coll time (%) = 0.466522 (31.3525) Sort time (%) = 0.0763968 (5.13422) Comm time (%) = 0.182341 (12.2542) Modfy time (%) = 0 (0) Outpt time (%) = 0.00142902 (0.0960369) Other time (%) = 0.000244495 (0.0164312) Particles: 64000 ave 64610 max 63462 min Histogram: 1 4 8 9 14 9 12 4 2 1 Cells: 6400 ave 6400 max 6400 min Histogram: 64 0 0 0 0 0 0 0 0 0 GhostCell: 3433.69 ave 5120 max 1538 min Histogram: 2 4 4 12 10 8 8 8 0 8 EmptyCell: 1555.09 ave 2808 max 441 min Histogram: 2 10 0 20 0 14 6 6 4 2 timestep 7.00E-9 run $t run 100 Memory usage per proc in Mbytes: particles (ave,min,max) = 7.44173 7.44173 7.44173 grid (ave,min,max) = 2.42208 1.51388 2.45138 surf (ave,min,max) = 0 0 0 total (ave,min,max) = 9.86381 8.9556 9.8931 Step CPU Np Natt Ncoll c_temp 30 0 4096000 4111014 2892890 273.04308 100 0.87864399 4096000 393340 289694 273.04308 130 1.253864 4096000 398203 289119 273.04308 Loop time of 1.25395 on 64 procs for 100 steps with 4096000 particles Particle moves = 409600000 (410M) Cells touched = 571037244 (571M) Particle comms = 6611381 (6.61M) Boundary collides = 2216082 (2.22M) Boundary exits = 0 (0K) SurfColl checks = 0 (0K) SurfColl occurs = 0 (0K) Surf reactions = 0 (0K) Collide attempts = 38371362 (38.4M) Collide occurs = 28744104 (28.7M) Reactions = 0 (0K) Particles stuck = 0 Particle-moves/CPUsec/proc: 5.10385e+06 Particle-moves/step: 4.096e+06 Cell-touches/particle/step: 1.39413 Particle comm iterations/step: 1 Particle fraction communicated: 0.0161411 Particle fraction colliding with boundary: 0.00541036 Particle fraction exiting boundary: 0 Surface-checks/particle/step: 0 Surface-collisions/particle/step: 0 Surf-reactions/particle/step: 0 Collision-attempts/particle/step: 0.0936801 Collisions/particle/step: 0.070176 Reactions/particle/step: 0 Move time (%) = 0.717761 (57.2398) Coll time (%) = 0.22128 (17.6465) Sort time (%) = 0.231179 (18.436) Comm time (%) = 0.0802709 (6.40143) Modfy time (%) = 0 (0) Outpt time (%) = 0.00267831 (0.213589) Other time (%) = 0.000786029 (0.062684) Particles: 64000 ave 64584 max 63542 min Histogram: 4 8 9 12 7 7 6 6 1 4 Cells: 6400 ave 6400 max 6400 min Histogram: 64 0 0 0 0 0 0 0 0 0 GhostCell: 3433.69 ave 5120 max 1538 min Histogram: 2 4 4 12 10 8 8 8 0 8 EmptyCell: 1555.09 ave 2808 max 441 min Histogram: 2 10 0 20 0 14 6 6 4 2